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RIVM-bioinformatics / AmpliGone
Rijksinstituut voor Volksgezondheid en Milieu
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment

python bioinformatics illumina nanopore ngs-analysis pcr rivm amplicon-sequencing

Python

5 dagen geleden bijgewerkt
RIVM-bioinformatics / ViroConstrictor
Rijksinstituut voor Volksgezondheid en Milieu
ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and generate biologically correct consensus sequences of the given viral genome

python analysis bioinformatics ngs-analysis rivm consensus-sequences public-health snakemake-workflow virology viruses snakemake

Python

6 dagen geleden bijgewerkt
RIVM-bioinformatics / AminoExtract
Rijksinstituut voor Volksgezondheid en Milieu
AminoExtract is a tool for translating and extracting amino acid sequences from nucleotide-sequences based on a GFF input

bioinformatics python ngs-analysis

Python

1 maand geleden bijgewerkt
RIVM-bioinformatics / SARS2seq
Rijksinstituut voor Volksgezondheid en Milieu
SARS2seq is a pipeline designed to process raw FastQ data from targeted SARS-CoV-2 sequencing and generate biologically correct consensus sequences of the SARS-CoV-2 genome.

python virology bioinformatics ngs-analysis rivm consensus-sequences coronavirus-analysis coronavirus public-health snakemake-workflow viruses snakemake

Python

4 maanden geleden bijgewerkt
RIVM-bioinformatics / TrueConsense
Rijksinstituut voor Volksgezondheid en Milieu
TrueConsense is a consensus caller for viral-targets that create biologically correct consensus sequences. TrueConsense keeps track of open reading frames, compensates for common sequencing or alignment artefacts, and is able to generate consensus sequences on multiple coverage-thresholds at the same time

consensus-calling bioinformatics ngs-analysis virology

Python

8 maanden geleden bijgewerkt

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